This list includes peer reviewed and non-peer reviewed journals dealing with Aquaculture, Crustaceans, Ecology, Estuaries, Fisheries (finfish), Limnology, Marine Biology, Microbiology (aquatic systems), Shellfish (mollusks), Water quality, and Water resource management.

Mote's research programs in the areas of benthic ecology; fisheries enhancement; environmental chemistry; marine mammals; sharks; sea turtles; coastal resources; phytoplankton ecology; marine microbiology